The expected victory by the ruling United Russia party is likely to be used by the Kremlin as proof of support for Vladimir Putin, who has been in power as either president or prime minister since 1999.
Allies of Navalny, who is serving a jail sentence for parole violations he denies, are encouraging tactical voting against United Russia, that amounts to supporting the candidate most likely to defeat the ruling party in a given electoral district.
Authorities have tried to block the initiative online.
An independent election watchdog, Golos, said it had recorded many violations during the three-day vote, including threats against observers and ballot stuffing, blatant examples of which circulated on social media, with some individuals caught on camera depositing bundles of voting slips in urns.
The Central Election Commission said it had recorded cases of ballet stuffing in six regions and that the results from those polling stations would be voided.
The Central Election Commission reported total voter turnout at 40.5% as of 1500 Moscow time (1200 GMT) yesterday.
United Russia is facing a ratings slump due to public malaise over years of faltering living standards, state pollsters say, but it remains more popular than its closest rivals on the ballot, the Communist Party and the nationalist LDPR party, which often back the Kremlin anyway.
United Russia holds nearly three-quarters of the outgoing State Duma’s 450 seats.
That dominance last year helped the Kremlin pass constitutional reforms that allow Putin to run for two more terms as president after 2024, potentially staying in power until 2036.
Navalny’s allies were barred from running after his movement was banned in June as extremist.
Other opposition figures say they were targeted with dirty tricks campaigns.
A Communist strawberry tycoon says he was unfairly barred, while a liberal opposition politician in St Petersburg says two identically-named “spoiler” candidates are running against him to confuse his voters.
The Kremlin denies a politically-driven crackdown and says individuals are prosecuted for breaking the law.
Both it and United Russia deny any role in the registration process for candidates.
Since voting began on Friday, Google, Apple and Telegram messenger have limited some access to the tactical voting campaign, leading activists to accuse them of caving to pressure from the government.
Apple and Google have not responded to the allegation.
Sources familiar with Google and Apple’s decision told AFP the move was taken under pressure from Russian authorities, including threats to arrest the tech giants’ local staff.
By late Friday, the popular Telegram messenger had also removed Navalny’s Smart Voting bot, and yesterday Google Docs and YouTube videos containing the lists of the recommended candidates had also been blocked.
The election is the last national vote before the 2024 presidential election.
Putin, who turns 69 next month, has not said whether he will run again.
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